STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW11733.1Uncharacterized conserved protein, DUF849 family. (302 aa)    
Predicted Functional Partners:
lcdH
Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
  
 0.959
SDW11695.1
Apolipoprotein D and lipocalin family protein.
       0.784
SDW11599.1
EamA-like transporter family protein.
       0.746
SDW04015.1
acyl-CoA thioester hydrolase.
 
  
 0.723
SDX52166.1
3-hydroxyacyl-CoA dehydrogenase.
 
    0.708
SDW11862.1
Predicted oxidoreductase.
       0.640
SDX11654.1
Kynurenine formamidase.
  
    0.541
SDW77885.1
Uncharacterized conserved protein, DUF849 family.
  
     0.485
SDW11905.1
Cyanate permease.
  
    0.450
SDW81316.1
Peptide/nickel transport system substrate-binding protein.
  
     0.414
Your Current Organism:
Sulfitobacter pontiacus
NCBI taxonomy Id: 60137
Other names: DSM 10014, JCM 21789, S. pontiacus, VKM B-2022, strain ChLG 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.