STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW21896.1Hypothetical protein. (571 aa)    
Predicted Functional Partners:
SDW17995.1
3-hydroxyacyl-CoA dehydrogenase.
 
 0.977
SDW54624.1
Enoyl-CoA hydratase/carnithine racemase.
  
  0.936
SDX64627.1
Acyl-CoA dehydrogenase.
  
  
  0.935
PcaF
Hypothetical protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.933
SDW02642.1
3-methylcrotonyl-CoA carboxylase beta subunit.
  
 
 0.925
SDX35800.1
acyl-CoA dehydrogenase.
  
  
  0.917
SDW17420.1
glutaryl-CoA dehydrogenase.
  
  
 
0.915
SDW02612.1
3-methylcrotonoyl-CoA carboxylase, alpha subunit.
  
 0.913
PutA
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
 0.907
SDX49460.1
Electron transfer flavoprotein alpha subunit apoprotein.
 
 0.852
Your Current Organism:
Sulfitobacter pontiacus
NCBI taxonomy Id: 60137
Other names: DSM 10014, JCM 21789, S. pontiacus, VKM B-2022, strain ChLG 10
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