Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDW37033.1 | SDW46765.1 | SAMN04488041_1028 | SAMN04488041_102273 | Opacity protein. | Periplasmic chaperone for outer membrane proteins Skp. | 0.832 |
| SDW37033.1 | SDX03138.1 | SAMN04488041_1028 | SAMN04488041_104212 | Opacity protein. | Hypothetical protein. | 0.414 |
| SDW37033.1 | SDX21685.1 | SAMN04488041_1028 | SAMN04488041_105109 | Opacity protein. | Outer membrane protein OmpU. | 0.425 |
| SDW37033.1 | SDX30915.1 | SAMN04488041_1028 | SAMN04488041_105409 | Opacity protein. | Hypothetical protein. | 0.439 |
| SDW37033.1 | rplX | SAMN04488041_1028 | SAMN04488041_101677 | Opacity protein. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.425 |
| SDW37033.1 | rplY | SAMN04488041_1028 | SAMN04488041_104131 | Opacity protein. | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.419 |
| SDW37033.1 | rpsN | SAMN04488041_1028 | SAMN04488041_101675 | Opacity protein. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.419 |
| SDW37033.1 | secA | SAMN04488041_1028 | SAMN04488041_105400 | Opacity protein. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.615 |
| SDW46765.1 | SDW37033.1 | SAMN04488041_102273 | SAMN04488041_1028 | Periplasmic chaperone for outer membrane proteins Skp. | Opacity protein. | 0.832 |
| SDX03138.1 | SDW37033.1 | SAMN04488041_104212 | SAMN04488041_1028 | Hypothetical protein. | Opacity protein. | 0.414 |
| SDX21685.1 | SDW37033.1 | SAMN04488041_105109 | SAMN04488041_1028 | Outer membrane protein OmpU. | Opacity protein. | 0.425 |
| SDX30915.1 | SDW37033.1 | SAMN04488041_105409 | SAMN04488041_1028 | Hypothetical protein. | Opacity protein. | 0.439 |
| rplX | SDW37033.1 | SAMN04488041_101677 | SAMN04488041_1028 | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | Opacity protein. | 0.425 |
| rplX | rplY | SAMN04488041_101677 | SAMN04488041_104131 | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.976 |
| rplX | rpsN | SAMN04488041_101677 | SAMN04488041_101675 | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.997 |
| rplX | secA | SAMN04488041_101677 | SAMN04488041_105400 | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.668 |
| rplY | SDW37033.1 | SAMN04488041_104131 | SAMN04488041_1028 | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Opacity protein. | 0.419 |
| rplY | rplX | SAMN04488041_104131 | SAMN04488041_101677 | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.976 |
| rplY | rpsN | SAMN04488041_104131 | SAMN04488041_101675 | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.972 |
| rplY | secA | SAMN04488041_104131 | SAMN04488041_105400 | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.734 |
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