STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DoeAEctoine hydrolase. (391 aa)    
Predicted Functional Partners:
DoeB
N-alpha-acetyl-L-2,4-diaminobutyrate deacetylase.
 
  
 0.993
SDW73772.1
L-2,4-diaminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.898
SDW73870.1
Transcriptional regulator, AsnC family.
   
 
 0.581
SDW59968.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 
 0.500
SDW73734.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
       0.444
SDX24586.1
Putative spermidine/putrescine transport system substrate-binding protein.
  
  
 0.403
Your Current Organism:
Sulfitobacter pontiacus
NCBI taxonomy Id: 60137
Other names: DSM 10014, JCM 21789, S. pontiacus, VKM B-2022, strain ChLG 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.