STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW81516.1Membrane fusion protein, adhesin transport system. (396 aa)    
Predicted Functional Partners:
SDW81480.1
ATP-binding cassette, subfamily C, LapB.
 
 0.993
SDW81436.1
Outer membrane protein, adhesin transport system.
 
 
 0.978
SDW81391.1
Ig-like domain (group 3).
 
  
 0.896
SDX27013.1
ATP-binding cassette, subfamily C.
  
 0.665
SDW13070.1
Outer membrane protein.
  
 
 0.623
SDW96248.1
Outer membrane protein, multidrug efflux system.
  
 
 0.623
SDX23198.1
Putative ABC transport system ATP-binding protein.
  
 
 0.594
SDX27249.1
Ca2+-binding protein, RTX toxin-related.
 
  
 0.592
SDX44966.1
Outer membrane protein TolC.
  
 
 0.569
SDW04302.1
Hemolysin-type calcium-binding repeat-containing protein.
 
  
 0.540
Your Current Organism:
Sulfitobacter pontiacus
NCBI taxonomy Id: 60137
Other names: DSM 10014, JCM 21789, S. pontiacus, VKM B-2022, strain ChLG 10
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