STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TcuBCitrate/tricarballylate utilization protein. (355 aa)    
Predicted Functional Partners:
TcuA
Tricarballylate dehydrogenase.
 
 
 0.988
SDW95720.1
Transcriptional regulator, GntR family.
 
     0.852
SDX49432.1
Electron transfer flavoprotein beta subunit.
   
 
 0.850
SDX43914.1
Fumarate reductase flavoprotein subunit.
 
 
 0.829
SDW95679.1
Hypothetical protein.
 
     0.814
SDW07057.1
Formate dehydrogenase.
   
 
 0.785
SDX01557.1
Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
 0.758
SDW02343.1
NADH dehydrogenase subunit E.
   
 
 0.734
SDW95454.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
  
     0.723
SDX10482.1
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
   
 
 0.710
Your Current Organism:
Sulfitobacter pontiacus
NCBI taxonomy Id: 60137
Other names: DSM 10014, JCM 21789, S. pontiacus, VKM B-2022, strain ChLG 10
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