STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX03983.1N-carbamoyl-L-amino-acid hydrolase. (433 aa)    
Predicted Functional Partners:
HydA
Dihydropyrimidinase.
 
 
 0.991
PreA
Dihydrouracil dehydrogenase (NAD+).
 
 0.943
SDX19193.1
N-carbamoyl-L-amino-acid hydrolase.
  
  
 
0.919
SDX73912.1
N-carbamoyl-L-amino-acid hydrolase.
  
  
 
0.908
SDX04109.1
Glutamate synthase (NADPH/NADH) small chain.
 
 
  0.879
SDW80995.1
malonyl-CoA/methylmalonyl-CoA synthetase.
   
 
  0.803
SDX19759.1
Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
    
 0.803
SDX20997.1
Aldehyde dehydrogenase (NAD+).
    
 0.803
SDX38896.1
Aldehyde dehydrogenase (acceptor).
    
 0.803
SDX04015.1
Transcriptional regulator, TetR family.
 
     0.659
Your Current Organism:
Sulfitobacter pontiacus
NCBI taxonomy Id: 60137
Other names: DSM 10014, JCM 21789, S. pontiacus, VKM B-2022, strain ChLG 10
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