Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
FtrA | SDX07514.1 | SAMN04488041_102402 | SAMN04488041_104346 | Transcriptional regulator, AraC family with amidase-like domain. | Transcriptional regulator, AraC family. | 0.449 |
PobA | SDX07514.1 | SAMN04488041_104345 | SAMN04488041_104346 | P-hydroxybenzoate 3-monooxygenase. | Transcriptional regulator, AraC family. | 0.754 |
SDX07514.1 | FtrA | SAMN04488041_104346 | SAMN04488041_102402 | Transcriptional regulator, AraC family. | Transcriptional regulator, AraC family with amidase-like domain. | 0.449 |
SDX07514.1 | PobA | SAMN04488041_104346 | SAMN04488041_104345 | Transcriptional regulator, AraC family. | P-hydroxybenzoate 3-monooxygenase. | 0.754 |
SDX07514.1 | SDX07552.1 | SAMN04488041_104346 | SAMN04488041_104347 | Transcriptional regulator, AraC family. | TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein. | 0.446 |
SDX07514.1 | SDX10383.1 | SAMN04488041_104346 | SAMN04488041_104439 | Transcriptional regulator, AraC family. | Transcriptional regulator, AraC family. | 0.630 |
SDX07514.1 | rpoA | SAMN04488041_104346 | SAMN04488041_101664 | Transcriptional regulator, AraC family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.622 |
SDX07552.1 | SDX07514.1 | SAMN04488041_104347 | SAMN04488041_104346 | TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein. | Transcriptional regulator, AraC family. | 0.446 |
SDX10383.1 | SDX07514.1 | SAMN04488041_104439 | SAMN04488041_104346 | Transcriptional regulator, AraC family. | Transcriptional regulator, AraC family. | 0.630 |
SDX10383.1 | rpoA | SAMN04488041_104439 | SAMN04488041_101664 | Transcriptional regulator, AraC family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.622 |
rpoA | SDX07514.1 | SAMN04488041_101664 | SAMN04488041_104346 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Transcriptional regulator, AraC family. | 0.622 |
rpoA | SDX10383.1 | SAMN04488041_101664 | SAMN04488041_104439 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Transcriptional regulator, AraC family. | 0.622 |