STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX23198.1Putative ABC transport system ATP-binding protein. (1033 aa)    
Predicted Functional Partners:
SDX46325.1
NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains.
   
   0.818
SDX23168.1
Hypothetical protein.
     
 0.800
SDW71942.1
Small-conductance mechanosensitive channel.
 
  
 0.797
SDW71809.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.791
SDW71856.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.790
SDW71723.1
Predicted glycosyl transferase.
  
   
 0.787
SDW71894.1
Predicted glycosyl transferase.
  
   
 0.787
SDW71700.1
Hypothetical protein.
 
     0.779
SDW72119.1
Peptide/nickel transport system substrate-binding protein.
  
   
 0.777
SDW72200.1
S-adenosyl-L-methionine methyltransferase.
  
     0.774
Your Current Organism:
Sulfitobacter pontiacus
NCBI taxonomy Id: 60137
Other names: DSM 10014, JCM 21789, S. pontiacus, VKM B-2022, strain ChLG 10
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