Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GltB | SDX27688.1 | SAMN04488041_104500 | SAMN04488041_105307 | Glutamate synthase (NADPH) large subunit. | Hypothetical protein. | 0.454 |
GltB | gcvP | SAMN04488041_104500 | SAMN04488041_104246 | Glutamate synthase (NADPH) large subunit. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.933 |
GltB | hisE | SAMN04488041_104500 | SAMN04488041_101266 | Glutamate synthase (NADPH) large subunit. | phosphoribosyl-ATP pyrophosphatase. | 0.549 |
SDX27503.1 | SDX27534.1 | SAMN04488041_105302 | SAMN04488041_105303 | HemY protein. | Uncharacterized conserved protein. | 0.930 |
SDX27503.1 | SDX27573.1 | SAMN04488041_105302 | SAMN04488041_105304 | HemY protein. | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | 0.789 |
SDX27503.1 | SDX27688.1 | SAMN04488041_105302 | SAMN04488041_105307 | HemY protein. | Hypothetical protein. | 0.625 |
SDX27503.1 | SDX27726.1 | SAMN04488041_105302 | SAMN04488041_105308 | HemY protein. | Predicted RNA-binding protein, contains PUA-like domain. | 0.659 |
SDX27503.1 | gpsA | SAMN04488041_105302 | SAMN04488041_105306 | HemY protein. | Glycerol-3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.605 |
SDX27503.1 | tsaD | SAMN04488041_105302 | SAMN04488041_105305 | HemY protein. | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.659 |
SDX27534.1 | SDX27503.1 | SAMN04488041_105303 | SAMN04488041_105302 | Uncharacterized conserved protein. | HemY protein. | 0.930 |
SDX27534.1 | SDX27573.1 | SAMN04488041_105303 | SAMN04488041_105304 | Uncharacterized conserved protein. | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | 0.831 |
SDX27534.1 | SDX27688.1 | SAMN04488041_105303 | SAMN04488041_105307 | Uncharacterized conserved protein. | Hypothetical protein. | 0.633 |
SDX27534.1 | SDX27726.1 | SAMN04488041_105303 | SAMN04488041_105308 | Uncharacterized conserved protein. | Predicted RNA-binding protein, contains PUA-like domain. | 0.663 |
SDX27534.1 | gpsA | SAMN04488041_105303 | SAMN04488041_105306 | Uncharacterized conserved protein. | Glycerol-3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.599 |
SDX27534.1 | tsaD | SAMN04488041_105303 | SAMN04488041_105305 | Uncharacterized conserved protein. | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.663 |
SDX27573.1 | SDX27503.1 | SAMN04488041_105304 | SAMN04488041_105302 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | HemY protein. | 0.789 |
SDX27573.1 | SDX27534.1 | SAMN04488041_105304 | SAMN04488041_105303 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Uncharacterized conserved protein. | 0.831 |
SDX27573.1 | SDX27688.1 | SAMN04488041_105304 | SAMN04488041_105307 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Hypothetical protein. | 0.744 |
SDX27573.1 | SDX27726.1 | SAMN04488041_105304 | SAMN04488041_105308 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Predicted RNA-binding protein, contains PUA-like domain. | 0.744 |
SDX27573.1 | gpsA | SAMN04488041_105304 | SAMN04488041_105306 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Glycerol-3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.744 |
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