STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX43721.1Transcriptional regulator, GntR family. (271 aa)    
Predicted Functional Partners:
SDX43624.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.888
SDX43914.1
Fumarate reductase flavoprotein subunit.
 
    0.888
SDX43754.1
4-oxalocrotonate tautomerase family enzyme.
 
     0.881
SDX43848.1
Nicotinamidase-related amidase.
 
    0.864
SDX43589.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.852
SDX43785.1
N-methylhydantoinase B.
 
     0.833
LeuD
3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
 
     0.822
SDX43817.1
N-methylhydantoinase A.
 
     0.814
leuC-2
3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
       0.782
SDX43878.1
2-Methylisocitrate lyase, PEP mutase family.
 
     0.776
Your Current Organism:
Sulfitobacter pontiacus
NCBI taxonomy Id: 60137
Other names: DSM 10014, JCM 21789, S. pontiacus, VKM B-2022, strain ChLG 10
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