STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX43878.12-Methylisocitrate lyase, PEP mutase family. (286 aa)    
Predicted Functional Partners:
SDX43914.1
Fumarate reductase flavoprotein subunit.
 
  
 0.935
SDX43848.1
Nicotinamidase-related amidase.
 
    0.933
GltA
Citrate synthase; Belongs to the citrate synthase family.
 
 
 0.919
SDX43754.1
4-oxalocrotonate tautomerase family enzyme.
 
     0.917
SDX43785.1
N-methylhydantoinase B.
 
     0.911
SDX43817.1
N-methylhydantoinase A.
 
     0.885
SDX43721.1
Transcriptional regulator, GntR family.
 
     0.776
SDX43624.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.730
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
  
 0.723
SDX43589.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.715
Your Current Organism:
Sulfitobacter pontiacus
NCBI taxonomy Id: 60137
Other names: DSM 10014, JCM 21789, S. pontiacus, VKM B-2022, strain ChLG 10
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