STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX56967.1Helix-turn-helix domain-containing protein. (85 aa)    
Predicted Functional Partners:
SDX56999.1
Hypothetical protein.
 
     0.848
SDX57030.1
Hypothetical protein.
 
     0.816
SDX57482.1
Hypothetical protein.
 
     0.795
SDX57519.1
Hypothetical protein.
 
     0.786
SDX57869.1
Hypothetical protein.
  
     0.757
SDX57800.1
Type IV secretion system T-DNA border endonuclease VirD2.
  
     0.750
SDX57308.1
Type IV secretion system protein VirB5.
 
     0.742
SDX57546.1
Type IV secretion system protein VirB6.
 
     0.741
SDX58035.1
Protein of unknown function.
  
     0.731
SDX57837.1
Hypothetical protein.
  
     0.726
Your Current Organism:
Sulfitobacter pontiacus
NCBI taxonomy Id: 60137
Other names: DSM 10014, JCM 21789, S. pontiacus, VKM B-2022, strain ChLG 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.