STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX57345.1Type IV secretion system protein VirB8. (218 aa)    
Predicted Functional Partners:
SDX57209.1
Type IV secretion system protein VirB4.
 
 
 0.997
SDX57382.1
Type IV secretion system protein VirB9.
 
  
 0.996
SDX57411.1
Type IV secretion system protein VirB10.
 
  
 0.996
SDX57167.1
Type IV secretion system protein VirB3.
 
 
 0.995
SDX57546.1
Type IV secretion system protein VirB6.
 
  
 0.994
SDX57519.1
Hypothetical protein.
 
     0.955
SDX57482.1
Hypothetical protein.
 
     0.950
SDX57448.1
Type IV secretion system protein VirB11.
 
   
 0.944
SDX57308.1
Type IV secretion system protein VirB5.
 
     0.932
SDX57137.1
Type IV secretion system protein VirB2.
 
   
 0.912
Your Current Organism:
Sulfitobacter pontiacus
NCBI taxonomy Id: 60137
Other names: DSM 10014, JCM 21789, S. pontiacus, VKM B-2022, strain ChLG 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.