STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX62940.1NHL repeat-containing protein. (285 aa)    
Predicted Functional Partners:
SDX62903.1
aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A.
 
    0.818
SDX62832.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.811
SDX62748.1
Hypothetical protein.
 
     0.806
SDX62864.1
TRAP transporter, DctM subunit.
       0.753
SDX62787.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.587
SDX62714.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.433
Your Current Organism:
Sulfitobacter pontiacus
NCBI taxonomy Id: 60137
Other names: DSM 10014, JCM 21789, S. pontiacus, VKM B-2022, strain ChLG 10
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.