STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX73164.1Type IV secretion system protein VirD4. (557 aa)    
Predicted Functional Partners:
SDX73234.1
Plasmid mobilization system relaxase.
 
   
 0.903
SDX73189.1
Relaxasome subunit MobC.
       0.775
SDX73141.1
Hypothetical protein.
       0.727
SDX76196.1
Hypothetical protein.
 
    0.719
SDX75418.1
Protein of unknown function.
 
    0.714
SDX72594.1
Antirestriction protein ArdC.
 
    0.712
SDX73120.1
Replication initiator protein A.
 
     0.674
SDX57411.1
Type IV secretion system protein VirB10.
 
 
 
 0.598
SDX73214.1
Hypothetical protein.
       0.564
SDX75480.1
Plasmid mobilization system relaxase.
 
   
 0.540
Your Current Organism:
Sulfitobacter pontiacus
NCBI taxonomy Id: 60137
Other names: DSM 10014, JCM 21789, S. pontiacus, VKM B-2022, strain ChLG 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.