A0A1V6ZB18 protein (Penicillium nalgiovense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1V6ZB18

Uncharacterized protein. (491 aa)

Predicted Functional Partners:

A0A1V6Z5C6

0.905

A0A1V6Z207

0.748

A0A1V6Z3W4

0.746

A0A1V6YYU4

0.687

A0A1V6YZX3

0.671

A0A1V6ZA83

0.663

A0A1V6Y9N1

0.662

A0A1V6YBI8

0.647

A0A1V6YXY4

0.642

A0A1V6YX24

0.633

Your Current Organism:

Penicillium nalgiovense

NCBI taxonomy Id: 60175
Other names: CBS 101030, CBS 352.48, IBT 21536, IBT 3800, IBT 3861, MUCL 31194, NRRL 911, P. nalgiovense

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6Y9N1	A0A1V6YBI8	Uncharacterized protein.	Uncharacterized protein.	0.893
A0A1V6Y9N1	A0A1V6YX24	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.410
A0A1V6Y9N1	A0A1V6YXY4	Uncharacterized protein.	Tr-type G domain-containing protein.	0.515
A0A1V6Y9N1	A0A1V6YYU4	Uncharacterized protein.	RRM domain-containing protein.	0.994
A0A1V6Y9N1	A0A1V6YZX3	Uncharacterized protein.	Uncharacterized protein.	0.897
A0A1V6Y9N1	A0A1V6Z207	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.897
A0A1V6Y9N1	A0A1V6Z3W4	Uncharacterized protein.	RRM domain-containing protein.	0.996
A0A1V6Y9N1	A0A1V6Z5C6	Uncharacterized protein.	Uncharacterized protein.	0.834
A0A1V6Y9N1	A0A1V6ZA83	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.788
A0A1V6Y9N1	A0A1V6ZB18	Uncharacterized protein.	Uncharacterized protein.	0.662
A0A1V6YBI8	A0A1V6Y9N1	Uncharacterized protein.	Uncharacterized protein.	0.893
A0A1V6YBI8	A0A1V6YYU4	Uncharacterized protein.	RRM domain-containing protein.	0.988
A0A1V6YBI8	A0A1V6YZX3	Uncharacterized protein.	Uncharacterized protein.	0.914
A0A1V6YBI8	A0A1V6Z207	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.986
A0A1V6YBI8	A0A1V6Z3W4	Uncharacterized protein.	RRM domain-containing protein.	0.991
A0A1V6YBI8	A0A1V6Z5C6	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A1V6YBI8	A0A1V6ZB18	Uncharacterized protein.	Uncharacterized protein.	0.647
A0A1V6YX24	A0A1V6Y9N1	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.410
A0A1V6YX24	A0A1V6ZB18	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.633
A0A1V6YXY4	A0A1V6Y9N1	Tr-type G domain-containing protein.	Uncharacterized protein.	0.515