A0A1R3RXV4 protein (Aspergillus carbonarius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1R3RXV4

Uncharacterized protein. (584 aa)

Predicted Functional Partners:

A0A1R3RDC3

0.552

A0A1R3RQM5

0.552

A0A1R3R8L8

0.516

A0A1R3RLJ6

0.440

A0A1R3RZY7

0.440

A0A1R3RM25

0.408

Your Current Organism:

Aspergillus carbonarius

NCBI taxonomy Id: 602072
Other names: A. carbonarius ITEM 5010, Aspergillus carbonarius ITEM 5010

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1R3R8L8	A0A1R3RDC3	Uncharacterized protein.	RRM domain-containing protein.	0.854
A0A1R3R8L8	A0A1R3RLJ6	Uncharacterized protein.	Glycoside hydrolase family 16 protein.	0.949
A0A1R3R8L8	A0A1R3RM25	Uncharacterized protein.	Uncharacterized protein.	0.961
A0A1R3R8L8	A0A1R3RQM5	Uncharacterized protein.	Uncharacterized protein.	0.846
A0A1R3R8L8	A0A1R3RXV4	Uncharacterized protein.	Uncharacterized protein.	0.516
A0A1R3R8L8	A0A1R3RZY7	Uncharacterized protein.	Glycoside hydrolase family 16 protein.	0.949
A0A1R3RDC3	A0A1R3R8L8	RRM domain-containing protein.	Uncharacterized protein.	0.854
A0A1R3RDC3	A0A1R3RLJ6	RRM domain-containing protein.	Glycoside hydrolase family 16 protein.	0.875
A0A1R3RDC3	A0A1R3RM25	RRM domain-containing protein.	Uncharacterized protein.	0.443
A0A1R3RDC3	A0A1R3RXV4	RRM domain-containing protein.	Uncharacterized protein.	0.552
A0A1R3RDC3	A0A1R3RZY7	RRM domain-containing protein.	Glycoside hydrolase family 16 protein.	0.875
A0A1R3RLJ6	A0A1R3R8L8	Glycoside hydrolase family 16 protein.	Uncharacterized protein.	0.949
A0A1R3RLJ6	A0A1R3RDC3	Glycoside hydrolase family 16 protein.	RRM domain-containing protein.	0.875
A0A1R3RLJ6	A0A1R3RM25	Glycoside hydrolase family 16 protein.	Uncharacterized protein.	0.717
A0A1R3RLJ6	A0A1R3RQM5	Glycoside hydrolase family 16 protein.	Uncharacterized protein.	0.875
A0A1R3RLJ6	A0A1R3RXV4	Glycoside hydrolase family 16 protein.	Uncharacterized protein.	0.440
A0A1R3RM25	A0A1R3R8L8	Uncharacterized protein.	Uncharacterized protein.	0.961
A0A1R3RM25	A0A1R3RDC3	Uncharacterized protein.	RRM domain-containing protein.	0.443
A0A1R3RM25	A0A1R3RLJ6	Uncharacterized protein.	Glycoside hydrolase family 16 protein.	0.717
A0A1R3RM25	A0A1R3RXV4	Uncharacterized protein.	Uncharacterized protein.	0.408