STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO87192.1Imidazolonepropionase. (456 aa)    
Predicted Functional Partners:
SFO87205.1
Imidazolonepropionase.
    
0.982
SFO87224.1
FKBP-type peptidyl-prolyl cis-trans isomerase.
       0.784
SFO87176.1
Proton-dependent oligopeptide transporter, POT family.
 
    0.738
SFO87235.1
Uncharacterized membrane protein.
       0.679
SFO85233.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.566
SFP25483.1
Imidazolonepropionase.
  
     0.515
SFO86667.1
Zn-dependent amino-or carboxypeptidase, M28 family.
  
     0.490
SFP25826.1
Zn-dependent amino-or carboxypeptidase, M28 family.
  
     0.472
SFP22352.1
TonB-dependent Receptor Plug Domain.
  
     0.464
SFO87163.1
Transcriptional regulator, GntR family.
       0.449
Your Current Organism:
Erythrobacter nanhaisediminis
NCBI taxonomy Id: 604088
Other names: CGMCC 1.7715, E. nanhaisediminis, Erythrobacter nanhaisediminis Xu et al. 2010, Erythrobacter sp. T30, JCM 16125, strain T30
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.