STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO89023.1Glutamate synthase domain-containing protein 2; Belongs to the glutamate synthase family. (529 aa)    
Predicted Functional Partners:
SFO86423.1
Glutamate synthase (NADH) small subunit.
 
 0.989
SFO86407.1
Glutamate synthase (NADH) large subunit.
 
0.987
SFP27368.1
Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 0.943
SFP13334.1
ferredoxin--NADP+ reductase.
  
 0.935
SFO89005.1
SnoaL-like domain-containing protein.
       0.807
SFO89037.1
Carboxymethylenebutenolidase.
       0.783
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
 0.744
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
 0.631
SFO89059.1
Hypothetical protein.
       0.572
mnmE
tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.544
Your Current Organism:
Erythrobacter nanhaisediminis
NCBI taxonomy Id: 604088
Other names: CGMCC 1.7715, E. nanhaisediminis, Erythrobacter nanhaisediminis Xu et al. 2010, Erythrobacter sp. T30, JCM 16125, strain T30
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