STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO94876.1DNA-binding transcriptional regulator, CsgD family. (168 aa)    
Predicted Functional Partners:
SFO94861.1
Hypothetical protein.
       0.634
SFO94829.1
RadC-like JAB domain-containing protein.
       0.546
SFO94848.1
Hypothetical protein.
       0.546
SFO94895.1
DNA-binding transcriptional regulator, CsgD family.
       0.513
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
       0.513
SFO94916.1
Hypothetical protein.
       0.419
Your Current Organism:
Erythrobacter nanhaisediminis
NCBI taxonomy Id: 604088
Other names: CGMCC 1.7715, E. nanhaisediminis, Erythrobacter nanhaisediminis Xu et al. 2010, Erythrobacter sp. T30, JCM 16125, strain T30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.