STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO98302.1Sodium/proton antiporter, CPA1 family. (455 aa)    
Predicted Functional Partners:
SFO98322.1
Amidase.
       0.806
SFO98339.1
TonB-dependent Receptor Plug Domain.
       0.645
SFP40936.1
Protein of unknown function.
  
     0.507
SFP31550.1
Hypothetical protein.
  
     0.503
SFO87569.1
Phosphatidate phosphatase APP1.
  
     0.477
SFO97401.1
Uncharacterized membrane protein.
 
     0.451
SFO81568.1
Kef-type potassium/proton antiporter, CPA2 family (TC 2.A.37.1); Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
 
 0.445
SFP05113.1
Kef-type potassium/proton antiporter, CPA2 family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
 
 0.445
SFP42247.1
Kef-type potassium/proton antiporter, CPA2 family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
 
 0.445
SFO92760.1
Uncharacterized conserved protein YafD, endonuclease/exonuclease/phosphatase (EEP) superfamily.
 
     0.437
Your Current Organism:
Erythrobacter nanhaisediminis
NCBI taxonomy Id: 604088
Other names: CGMCC 1.7715, E. nanhaisediminis, Erythrobacter nanhaisediminis Xu et al. 2010, Erythrobacter sp. T30, JCM 16125, strain T30
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