STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP13296.1PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (728 aa)    
Predicted Functional Partners:
SFO82734.1
PAS domain S-box-containing protein.
 0.997
SFP25756.1
Diguanylate cyclase with PAS/PAC sensor.
 
0.982
SFO86148.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
 0.975
SFO97120.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
 0.946
SFO97016.1
Methyl-accepting chemotaxis protein.
 
 0.945
SFP37250.1
Response regulator receiver domain-containing protein.
  
 0.913
SFP05299.1
Multi-sensor hybrid histidine kinase.
 
 0.904
SFO97757.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
0.897
SFP16425.1
Na+/proline symporter.
  
 0.845
SFO85337.1
PAS domain S-box-containing protein; Manually curated.
  
 0.839
Your Current Organism:
Erythrobacter nanhaisediminis
NCBI taxonomy Id: 604088
Other names: CGMCC 1.7715, E. nanhaisediminis, Erythrobacter nanhaisediminis Xu et al. 2010, Erythrobacter sp. T30, JCM 16125, strain T30
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