STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP23632.1Glycosidase. (613 aa)    
Predicted Functional Partners:
SFO81583.1
Amino acid/polyamine/organocation transporter, APC superfamily.
   
 0.939
SFP08463.1
Amino acid/polyamine/organocation transporter, APC superfamily.
   
 0.939
SFP34592.1
Amino acid transporter.
   
 0.939
SFP23599.1
Alpha-glucosidase.
 
  
  0.937
SFP23582.1
Tryptophan halogenase.
 
     0.869
SFP23612.1
Alpha-glucosidase.
 
    
0.869
SFP23648.1
Tryptophan halogenase.
 
     0.868
SFP23734.1
Maltogenic amylase.
 
 
0.794
SFP23666.1
Iron complex outermembrane recepter protein.
 
     0.782
SFP23686.1
Transcriptional regulator, LacI family.
 
 
 0.681
Your Current Organism:
Erythrobacter nanhaisediminis
NCBI taxonomy Id: 604088
Other names: CGMCC 1.7715, E. nanhaisediminis, Erythrobacter nanhaisediminis Xu et al. 2010, Erythrobacter sp. T30, JCM 16125, strain T30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.