STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO66518.1Aspartyl protease. (404 aa)    
Predicted Functional Partners:
SEN94494.1
Protein of unknown function.
 
     0.676
SEO69576.1
Transcriptional regulator, MarR family.
  
     0.589
SEO65018.1
Metallo-beta-lactamase class B.
  
     0.538
SEO69468.1
DNA-binding transcriptional regulator, MarR family.
  
     0.494
SEO41961.1
Hypothetical protein.
  
     0.486
SEN98379.1
Outer membrane protein TolC.
  
     0.474
SEO69516.1
Predicted lactoylglutathione lyase.
  
     0.430
SEN91070.1
SusD family protein.
  
   0.429
SEO46885.1
Protein of unknown function.
  
     0.409
SEO60783.1
TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region.
  
     0.400
Your Current Organism:
Flavobacterium sinopsychrotolerans
NCBI taxonomy Id: 604089
Other names: CGMCC 1.8704, F. sinopsychrotolerans, Flavobacterium sinopsychrotolerans Xu et al. 2011, Flavobacterium sp. 0533, JCM 16398, strain 0533
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.