STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN64552.1MFS transporter, ACS family, hexuronate transporter. (482 aa)    
Predicted Functional Partners:
uxaC
D-glucuronate isomerase.
 
   
 0.709
SEN64339.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
 
   
 0.706
SEN64370.1
2-dehydro-3-deoxygluconokinase.
 
     0.683
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
     0.650
SEN64472.1
Gluconate 5-dehydrogenase.
 
    0.625
SEN64582.1
Hypothetical protein.
       0.625
SEN64406.1
Cupin domain protein.
 
     0.616
SEN64298.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
    0.580
SEN64615.1
Acetyl esterase/lipase.
 
     0.487
SEN64226.1
Altronate hydrolase.
 
  
 0.470
Your Current Organism:
Flavobacterium sinopsychrotolerans
NCBI taxonomy Id: 604089
Other names: CGMCC 1.8704, F. sinopsychrotolerans, Flavobacterium sinopsychrotolerans Xu et al. 2011, Flavobacterium sp. 0533, JCM 16398, strain 0533
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.