STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN78467.1Ca-activated chloride channel family protein. (343 aa)    
Predicted Functional Partners:
SEN78447.1
Tetratricopeptide repeat-containing protein.
     0.942
SEN78556.1
Protein of unknown function DUF58.
 
  
 0.932
SEN78426.1
Oxygen tolerance.
 
     0.931
SEN78621.1
MoxR-like ATPase.
 
 
 0.906
SEN78534.1
Hypothetical protein.
 
     0.891
SEO11360.1
Magnesium chelatase subunit I.
  
 0.884
SEN78396.1
SH3 domain-containing protein.
 
     0.868
SEN78498.1
Ca-activated chloride channel family protein.
 
   
0.788
SEN60042.1
MoxR-like ATPase.
 
 
 0.650
SEO50589.1
Protein of unknown function DUF58.
 
  
 0.563
Your Current Organism:
Flavobacterium sinopsychrotolerans
NCBI taxonomy Id: 604089
Other names: CGMCC 1.8704, F. sinopsychrotolerans, Flavobacterium sinopsychrotolerans Xu et al. 2011, Flavobacterium sp. 0533, JCM 16398, strain 0533
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.