STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN80563.1Protein of unknown function. (262 aa)    
Predicted Functional Partners:
SEN80609.1
Tetratricopeptide repeat-containing protein.
 
  
 0.836
SEN80534.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
 
     0.738
SEO42158.1
Outer membrane lipoprotein-sorting protein.
  
 
 
 0.729
SEN80638.1
Glucose-1-phosphate thymidylyltransferase.
       0.712
SEO54522.1
LPS export ABC transporter protein LptC.
  
   
 0.655
SEO34508.1
Protein of unknown function.
  
     0.652
SEN65284.1
Hypothetical protein.
  
     0.631
SEN99480.1
Family of unknown function.
  
     0.630
SEO32835.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.604
dut
dUTP pyrophosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
       0.593
Your Current Organism:
Flavobacterium sinopsychrotolerans
NCBI taxonomy Id: 604089
Other names: CGMCC 1.8704, F. sinopsychrotolerans, Flavobacterium sinopsychrotolerans Xu et al. 2011, Flavobacterium sp. 0533, JCM 16398, strain 0533
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