STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEO08220.1PAS domain S-box-containing protein. (897 aa)    
Predicted Functional Partners:
SEO64996.1
PAS domain S-box-containing protein.
 
0.999
SEO65671.1
PAS domain S-box-containing protein.
 
 0.999
SEN66847.1
PAS domain S-box-containing protein.
 
0.999
SEN94590.1
Signal transduction histidine kinase.
 
0.999
SEN97547.1
PAS domain S-box-containing protein.
 
0.999
SEO02076.1
PAS domain S-box-containing protein.
 
0.999
SEO08047.1
PAS domain S-box-containing protein.
 
0.999
SEO08080.1
Signal transduction histidine kinase.
 
0.999
SEO25728.1
PAS domain S-box-containing protein.
 
0.999
SEN67002.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
0.998
Your Current Organism:
Flavobacterium sinopsychrotolerans
NCBI taxonomy Id: 604089
Other names: CGMCC 1.8704, F. sinopsychrotolerans, Flavobacterium sinopsychrotolerans Xu et al. 2011, Flavobacterium sp. 0533, JCM 16398, strain 0533
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.