Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEN66235.1 | SEO48288.1 | SAMN04487942_0521 | SAMN04487942_2872 | Cell division protein FtsW; Belongs to the SEDS family. | DNA polymerase V. | 0.522 |
SEN66235.1 | SEO50500.1 | SAMN04487942_0521 | SAMN04487942_2954 | Cell division protein FtsW; Belongs to the SEDS family. | DNA polymerase-3 subunit alpha. | 0.483 |
SEN66235.1 | SEO64585.1 | SAMN04487942_0521 | SAMN04487942_0016 | Cell division protein FtsW; Belongs to the SEDS family. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.551 |
SEN68094.1 | SEO16134.1 | SAMN04487942_0576 | SAMN04487942_1969 | Protein of unknown function. | Hypothetical protein. | 0.490 |
SEN68094.1 | SEO48288.1 | SAMN04487942_0576 | SAMN04487942_2872 | Protein of unknown function. | DNA polymerase V. | 0.733 |
SEN82980.1 | SEO48288.1 | SAMN04487942_1104 | SAMN04487942_2872 | DNA polymerase-3 subunit delta'. | DNA polymerase V. | 0.645 |
SEN82980.1 | SEO50500.1 | SAMN04487942_1104 | SAMN04487942_2954 | DNA polymerase-3 subunit delta'. | DNA polymerase-3 subunit alpha. | 0.999 |
SEN82980.1 | SEO64585.1 | SAMN04487942_1104 | SAMN04487942_0016 | DNA polymerase-3 subunit delta'. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.996 |
SEN82980.1 | polA | SAMN04487942_1104 | SAMN04487942_0704 | DNA polymerase-3 subunit delta'. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.984 |
SEN82980.1 | recA | SAMN04487942_1104 | SAMN04487942_1101 | DNA polymerase-3 subunit delta'. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.844 |
SEO09766.1 | SEO48288.1 | SAMN04487942_1723 | SAMN04487942_2872 | Hypothetical protein; Belongs to the peptidase S24 family. | DNA polymerase V. | 0.624 |
SEO09766.1 | SEO50500.1 | SAMN04487942_1723 | SAMN04487942_2954 | Hypothetical protein; Belongs to the peptidase S24 family. | DNA polymerase-3 subunit alpha. | 0.468 |
SEO09766.1 | recA | SAMN04487942_1723 | SAMN04487942_1101 | Hypothetical protein; Belongs to the peptidase S24 family. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.950 |
SEO16134.1 | SEN68094.1 | SAMN04487942_1969 | SAMN04487942_0576 | Hypothetical protein. | Protein of unknown function. | 0.490 |
SEO16134.1 | SEO48288.1 | SAMN04487942_1969 | SAMN04487942_2872 | Hypothetical protein. | DNA polymerase V. | 0.522 |
SEO48258.1 | SEO48288.1 | SAMN04487942_2871 | SAMN04487942_2872 | DNA polymerase V; Belongs to the peptidase S24 family. | DNA polymerase V. | 0.971 |
SEO48258.1 | SEO50500.1 | SAMN04487942_2871 | SAMN04487942_2954 | DNA polymerase V; Belongs to the peptidase S24 family. | DNA polymerase-3 subunit alpha. | 0.450 |
SEO48258.1 | recA | SAMN04487942_2871 | SAMN04487942_1101 | DNA polymerase V; Belongs to the peptidase S24 family. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.950 |
SEO48288.1 | SEN66235.1 | SAMN04487942_2872 | SAMN04487942_0521 | DNA polymerase V. | Cell division protein FtsW; Belongs to the SEDS family. | 0.522 |
SEO48288.1 | SEN68094.1 | SAMN04487942_2872 | SAMN04487942_0576 | DNA polymerase V. | Protein of unknown function. | 0.733 |
page 1 of 3