STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR64846.1Aromatic ring-opening dioxygenase, catalytic subunit, LigB family. (264 aa)    
Predicted Functional Partners:
SDR64844.1
NADPH-dependent FMN reductase.
  
 
 0.681
SDR76354.1
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
      0.582
SDR64843.1
DNA-binding transcriptional regulator, HxlR family.
       0.561
SDR64841.1
H+/Cl-antiporter ClcA.
       0.457
SDR64847.1
D-methionine transport system substrate-binding protein; Belongs to the nlpA lipoprotein family.
       0.420
SDR64950.1
Proline iminopeptidase; Belongs to the peptidase S33 family.
  
 
 0.404
SDR67351.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
 
 0.404
Your Current Organism:
Olsenella umbonata
NCBI taxonomy Id: 604330
Other names: CCUG 58604, DSM 22620, JCM 16156, O. umbonata, Olsenella sp. A2, Olsenella sp. lac15, Olsenella sp. lac16, Olsenella sp. lac31, Olsenella umbonata Kraatz et al. 2011, strain lac31
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