STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR67182.1Glycoside/pentoside/hexuronide:cation symporter, GPH family. (460 aa)    
Predicted Functional Partners:
SDR67186.1
Alpha-galactosidase.
 
  
 0.888
SDR78133.1
Ribonucleoside-diphosphate reductase alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
    
  0.853
SDR67192.1
Galactokinase; Belongs to the GHMP kinase family.
  
  
 0.674
galT
UTP-hexose-1-phosphate uridylyltransferase.
  
  
 0.638
SDR67176.1
DNA-binding transcriptional regulator, AcrR family.
       0.563
thyA
Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.
    
  0.499
SDR67169.1
Hypothetical protein.
       0.446
SDR77668.1
Glutamate synthase (NADH) large subunit.
     
 0.443
SDR82455.1
PucR C-terminal helix-turn-helix domain-containing protein.
  
     0.442
SDR65880.1
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase.
  
     0.423
Your Current Organism:
Olsenella umbonata
NCBI taxonomy Id: 604330
Other names: CCUG 58604, DSM 22620, JCM 16156, O. umbonata, Olsenella sp. A2, Olsenella sp. lac15, Olsenella sp. lac16, Olsenella sp. lac31, Olsenella umbonata Kraatz et al. 2011, strain lac31
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