Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDR71327.1 | murG | SAMN04489857_0806 | SAMN04489857_0621 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.424 |
SDR71327.1 | xerC-2 | SAMN04489857_0806 | SAMN04489857_0943 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.662 |
SDR73994.1 | SDR74009.1 | SAMN04489857_0945 | SAMN04489857_0946 | DNA processing protein. | Magnesium chelatase family protein. | 0.989 |
SDR73994.1 | SDR74031.1 | SAMN04489857_0945 | SAMN04489857_0947 | DNA processing protein. | Uncharacterised protein family UPF0102; Belongs to the UPF0102 family. | 0.868 |
SDR73994.1 | SDR87725.1 | SAMN04489857_0945 | SAMN04489857_1486 | DNA processing protein. | comF family protein. | 0.789 |
SDR73994.1 | trmFO | SAMN04489857_0945 | SAMN04489857_0944 | DNA processing protein. | methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.760 |
SDR73994.1 | xerC-2 | SAMN04489857_0945 | SAMN04489857_0943 | DNA processing protein. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.786 |
SDR74009.1 | SDR73994.1 | SAMN04489857_0946 | SAMN04489857_0945 | Magnesium chelatase family protein. | DNA processing protein. | 0.989 |
SDR74009.1 | SDR74031.1 | SAMN04489857_0946 | SAMN04489857_0947 | Magnesium chelatase family protein. | Uncharacterised protein family UPF0102; Belongs to the UPF0102 family. | 0.892 |
SDR74009.1 | SDR87725.1 | SAMN04489857_0946 | SAMN04489857_1486 | Magnesium chelatase family protein. | comF family protein. | 0.544 |
SDR74009.1 | trmFO | SAMN04489857_0946 | SAMN04489857_0944 | Magnesium chelatase family protein. | methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.758 |
SDR74009.1 | xerC-2 | SAMN04489857_0946 | SAMN04489857_0943 | Magnesium chelatase family protein. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.737 |
SDR74031.1 | SDR73994.1 | SAMN04489857_0947 | SAMN04489857_0945 | Uncharacterised protein family UPF0102; Belongs to the UPF0102 family. | DNA processing protein. | 0.868 |
SDR74031.1 | SDR74009.1 | SAMN04489857_0947 | SAMN04489857_0946 | Uncharacterised protein family UPF0102; Belongs to the UPF0102 family. | Magnesium chelatase family protein. | 0.892 |
SDR74031.1 | trmFO | SAMN04489857_0947 | SAMN04489857_0944 | Uncharacterised protein family UPF0102; Belongs to the UPF0102 family. | methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.759 |
SDR74031.1 | xerC-2 | SAMN04489857_0947 | SAMN04489857_0943 | Uncharacterised protein family UPF0102; Belongs to the UPF0102 family. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.733 |
SDR74793.1 | SDR87725.1 | SAMN04489857_0985 | SAMN04489857_1486 | Prephenate dehydrogenase. | comF family protein. | 0.705 |
SDR74793.1 | apt | SAMN04489857_0985 | SAMN04489857_0827 | Prephenate dehydrogenase. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.649 |
SDR74793.1 | murG | SAMN04489857_0985 | SAMN04489857_0621 | Prephenate dehydrogenase. | UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.448 |
SDR74793.1 | xerC-2 | SAMN04489857_0985 | SAMN04489857_0943 | Prephenate dehydrogenase. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.617 |
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