STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR79175.1Type I restriction enzyme, R subunit. (1072 aa)    
Predicted Functional Partners:
SDR79216.1
Type I restriction enzyme M protein.
 
 0.995
SDR79190.1
Type I restriction enzyme, S subunit.
 
  
 0.978
SDR72598.1
Type I restriction enzyme M protein.
 
 
 0.954
SDR72583.1
Type I restriction enzyme, S subunit.
  
 0.883
SDR79153.1
Hypothetical protein.
       0.700
SDR79226.1
Ribbon-helix-helix protein, copG family.
       0.608
SDR72608.1
AAA ATPase domain-containing protein.
  
    0.598
SDS03354.1
Predicted transcriptional regulator, contains HTH domain; Manually curated.
  
    0.593
SDR81688.1
Hypothetical protein.
  
    0.573
SDR77716.1
Protein of unknown function DUF262.
 
   0.457
Your Current Organism:
Olsenella umbonata
NCBI taxonomy Id: 604330
Other names: CCUG 58604, DSM 22620, JCM 16156, O. umbonata, Olsenella sp. A2, Olsenella sp. lac15, Olsenella sp. lac16, Olsenella sp. lac31, Olsenella umbonata Kraatz et al. 2011, strain lac31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.