STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR88617.1Cd2+/Zn2+-exporting ATPase. (670 aa)    
Predicted Functional Partners:
SDR85400.1
Cu2+-exporting ATPase.
 
 
0.892
SDR81719.1
Copper chaperone CopZ.
  
 
 0.865
SDS00745.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  
 0.607
SDR85433.1
DNA-binding transcriptional regulator, FrmR family.
 
  
 0.574
SDR95869.1
Transcriptional regulator, ArsR family.
 
  
 0.523
SDR88633.1
Cobalt/nickel transport system permease protein.
  
  
 0.513
SDR88658.1
Cobalt/nickel transport system permease protein.
       0.501
SDR88676.1
Cobalt/nickel transport system ATP-binding protein.
       0.501
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
   
 0.483
SDR88580.1
BFD-like [2Fe-2S] binding domain-containing protein.
       0.469
Your Current Organism:
Olsenella umbonata
NCBI taxonomy Id: 604330
Other names: CCUG 58604, DSM 22620, JCM 16156, O. umbonata, Olsenella sp. A2, Olsenella sp. lac15, Olsenella sp. lac16, Olsenella sp. lac31, Olsenella umbonata Kraatz et al. 2011, strain lac31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.