STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR93405.1PTS system, trehalose-specific IIC component. (672 aa)    
Predicted Functional Partners:
SDR93470.1
Trehalose-6-phosphate hydrolase.
 
 
 0.952
SDR64968.1
Beta-fructofuranosidase; Belongs to the glycosyl hydrolase 32 family.
 
 0.932
SDR67428.1
Phosphocarrier protein.
  
 
 0.900
SDR65610.1
PTS system, glucose subfamily, IIA component.
 
0.891
SDS03139.1
PTS system IIB component, Glc family /PTS system IIC component, Glc family.
 
 0.887
SDR77205.1
Oligo-1,6-glucosidase.
 
 
 0.858
SDR93359.1
GntR family transcriptional regulator, trehalose operon transcriptional repressor.
 
   
 0.838
SDR65576.1
Glucokinase.
  
 0.803
SDR65926.1
Glucokinase.
  
 0.803
SDS03322.1
PTS system, glucose subfamily, IIA component.
 
0.761
Your Current Organism:
Olsenella umbonata
NCBI taxonomy Id: 604330
Other names: CCUG 58604, DSM 22620, JCM 16156, O. umbonata, Olsenella sp. A2, Olsenella sp. lac15, Olsenella sp. lac16, Olsenella sp. lac31, Olsenella umbonata Kraatz et al. 2011, strain lac31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.