Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TSIB_0041Hypothetical protein. (756 aa)    
Predicted Functional Partners:
TSIB_0040
Hypothetical protein.
       0.885
TSIB_0042
DUF2341 domain containing protein.
       0.885
TSIB_0043
DUF2101 domain containing protein.
       0.885
TSIB_0039
Hypothetical protein.
       0.847
TSIB_0037
DUF361 domain containing protein.
       0.824
TSIB_0038
Hypothetical protein.
       0.824
TSIB_0036
Hypothetical protein.
     
 0.796
TSIB_0034
Putative squalene-hopene cyclase.
       0.790
cetZ
Cell division GTPase; Involved in cell shape control; Belongs to the CetZ family.
       0.790
TSIB_0033
Fe-S oxidoreductase.
       0.742
Your Current Organism:
Thermococcus sibiricus
NCBI taxonomy Id: 604354
Other names: T. sibiricus MM 739, Thermococcus sibiricus MM 739, Thermococcus sibiricus str. MM 739, Thermococcus sibiricus strain MM 739
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