STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSIB_0165DEAD/H associated family. (863 aa)    
Predicted Functional Partners:
TSIB_0939
Metallophosphoesterase, calcineurin superfamily.
 
    0.734
TSIB_0164
Tryptophan/tyrosine permease family.
       0.625
lig
DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair; Belongs to the ATP-dependent DNA ligase family.
 
    0.601
TSIB_0253
Putative mRNA 3'-end processing factor.
 
    0.589
TSIB_0167
Hypothetical protein.
       0.556
TSIB_0166
Hypothetical protein.
       0.533
TSIB_0168
Hypothetical protein.
       0.463
TSIB_0162
ABC-type sulfate transport system, permease component.
       0.428
TSIB_0163
ABC transporter, ATP-binding protein.
       0.428
Your Current Organism:
Thermococcus sibiricus
NCBI taxonomy Id: 604354
Other names: T. sibiricus MM 739, Thermococcus sibiricus MM 739, Thermococcus sibiricus str. MM 739, Thermococcus sibiricus strain MM 739
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.