Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
TSIB_0283NiFe hydrogenase I, subunit gamma. (297 aa)    
Predicted Functional Partners:
TSIB_0282
NiFe hydrogenase I, subunit beta.
 
 0.999
TSIB_0284
NiFe hydrogenase I, subunit delta.
 
 
 0.999
TSIB_1520
NiFe hydrogenase II, subunit beta.
 
 0.998
TSIB_0285
NiFe hydrogenase I, catalytic subunit alpha.
 
 
 0.997
TSIB_1523
NiFe hydrogenase II, catalytic subunit alpha.
 
 
 0.986
TSIB_1522
NiFe hydrogenase II, subunit delta.
 
 
 0.985
TSIB_1361
Cysteine synthase.
  
 
 0.911
TSIB_1521
NiFe hydrogenase II, subunit gamma.
  
  
 
0.904
TSIB_0286
Hydrogenase-specific maturation endopeptidase.
  
    0.866
pyrD
Dihydroorotate dehydrogenase family protein; Catalyzes the conversion of dihydroorotate to orotate.
 
 
 0.854
Your Current Organism:
Thermococcus sibiricus
NCBI taxonomy Id: 604354
Other names: T. sibiricus MM 739, Thermococcus sibiricus MM 739, Thermococcus sibiricus str. MM 739, Thermococcus sibiricus strain MM 739
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