Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
TSIB_0774Aromatic aminotransferase. (393 aa)    
Predicted Functional Partners:
TSIB_0775
Carbamoyl transferase, NodU family.
       0.748
TSIB_0773
Alkyldihydroxyacetonephosphate synthase.
  
  
 0.543
TSIB_0768
Glycerol kinase.
   
 
 0.521
TSIB_0771
Predicted dehydrogenase.
  
  
 0.503
TSIB_1235
Putative amino acid racemase.
  
  
 0.478
TSIB_0772
Hypothetical protein.
       0.474
TSIB_0776
Putative carbohydrate-binding protein.
  
  
 0.465
TSIB_0767
Hydrogenase expression/formation protein HypE.
 
     0.454
TSIB_1477
Homoserine dehydrogenase.
 
 
 0.451
TSIB_0770
FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
     
 0.444
Your Current Organism:
Thermococcus sibiricus
NCBI taxonomy Id: 604354
Other names: T. sibiricus MM 739, Thermococcus sibiricus MM 739, Thermococcus sibiricus str. MM 739, Thermococcus sibiricus strain MM 739
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