STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSIB_0816DUF88 domain containing protein. (153 aa)    
Predicted Functional Partners:
TSIB_0814
Metalloprotease.
       0.605
TSIB_0815
RNA-binding protein, containing KH domain.
       0.605
TSIB_1678
RecJ-like exonuclease, containing OB-fold nucleic acid-binding domains.
 
    0.592
TSIB_0818
Hypothetical protein.
       0.513
TSIB_0817
Hypothetical protein.
       0.511
TSIB_1310
Predicted RNA-binding protein, containing TRAM domain.
  
     0.505
TSIB_0614
Predicted RNA-binding protein, containing TRAM domain.
  
     0.485
hjc
Archaeal type Holliday junction resolvase; A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products; Belongs to the Holliday junction resolvase Hjc family.
  
     0.455
TSIB_1608
Archaeal heat shock regulator, ArsR family.
  
     0.452
TSIB_0533
Predicted ATPase, PP-loop superfamily.
  
     0.446
Your Current Organism:
Thermococcus sibiricus
NCBI taxonomy Id: 604354
Other names: T. sibiricus MM 739, Thermococcus sibiricus MM 739, Thermococcus sibiricus str. MM 739, Thermococcus sibiricus strain MM 739
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.