Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TSIB_0902TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component. (198 aa)    
Predicted Functional Partners:
TSIB_0903
Hypothetical protein.
  
  0.998
TSIB_0904
TRAP-T family protein transporter, small (4 TMs) inner membrane subunit.
 
     0.859
TSIB_0905
Putative large integral membrane transport protein.
 
     0.836
TSIB_0374
TRAP-type transporter, fused permease components.
 
     0.500
TSIB_0376
TRAP-type transporter, periplasmic component.
  
     0.425
Your Current Organism:
Thermococcus sibiricus
NCBI taxonomy Id: 604354
Other names: T. sibiricus MM 739, Thermococcus sibiricus MM 739, Thermococcus sibiricus str. MM 739, Thermococcus sibiricus strain MM 739
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