Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TSIB_0969Archaeal ATPase. (350 aa)    
Predicted Functional Partners:
TSIB_0970
TRNA m1G methyltransferase.
       0.592
TSIB_0665
Predicted glutamine amidotransferase, class II.
  
     0.587
TSIB_0965
DEXX-box atpase.
  
     0.547
TSIB_0959
DEXX-box atpase.
  
     0.535
TSIB_0414
Putative membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.533
TSIB_0971
Hypothetical protein.
       0.473
TSIB_2034
Archaeal ATPase.
  
     0.464
TSIB_1828
DEXX-box atpase.
  
     0.450
TSIB_0259
Archaeal ATPase.
  
     0.448
Your Current Organism:
Thermococcus sibiricus
NCBI taxonomy Id: 604354
Other names: T. sibiricus MM 739, Thermococcus sibiricus MM 739, Thermococcus sibiricus str. MM 739, Thermococcus sibiricus strain MM 739
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