Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TSIB_0984Transcription regulator, Lrp/AsnC family. (159 aa)    
Predicted Functional Partners:
TSIB_1705
Transcriptional regulatory protein, asnC family.
  
   
 0.714
TSIB_1045
Transcriptional regulatory protein, asnC family.
   
 
 0.665
TSIB_0424
Probable transcription regulator, DUF118 helix-turn-helix family.
      
 0.557
TSIB_0985
Aspartate aminotransferase.
     
 0.495
TSIB_0986
Sodium:proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
     
 0.406
TSIB_0983
Permease, drug/metabolite transporter (DMT) superfamily.
       0.405
Your Current Organism:
Thermococcus sibiricus
NCBI taxonomy Id: 604354
Other names: T. sibiricus MM 739, Thermococcus sibiricus MM 739, Thermococcus sibiricus str. MM 739, Thermococcus sibiricus strain MM 739
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