Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TSIB_1265Predicted transcription regulator, Lrp/AsnC family. (149 aa)    
Predicted Functional Partners:
TSIB_1263
Transcriptional regulator.
 
  
 0.831
TSIB_1266
Integral membrane protein.
       0.827
TSIB_1264
Putative regulatory protein.
       0.814
TSIB_1262
Predicted metalloprotease, containing Jab1/MPN domain.
       0.589
TSIB_0089
Predicted ATP-dependent protease; Contains an intein; Belongs to the peptidase S16 family.
 
     0.459
TSIB_0088
Hypothetical protein.
       0.406
Your Current Organism:
Thermococcus sibiricus
NCBI taxonomy Id: 604354
Other names: T. sibiricus MM 739, Thermococcus sibiricus MM 739, Thermococcus sibiricus str. MM 739, Thermococcus sibiricus strain MM 739
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