STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSIB_1736IS element ISTsi1 orfB, putative trasposase. (393 aa)    
Predicted Functional Partners:
TSIB_1735
IS element ISTsi1 orfA, putative resolvase.
 
  
 0.912
TSIB_0261
IS element ISTsi3 orfB, probably transposase.
  
     0.679
TSIB_2042
IS element ISTsi1 orfA, putative resolvase.
 
  
 0.629
TSIB_0260
IS element ISTsi3 orfA-like, probably transposase.
 
  
 0.601
TSIB_1615
DUF55 domain containing protein; Belongs to the UPF0310 family.
  
     0.460
TSIB_1734
Hypothetical protein.
       0.439
TSIB_2039
Hypothetical protein.
 
     0.402
Your Current Organism:
Thermococcus sibiricus
NCBI taxonomy Id: 604354
Other names: T. sibiricus MM 739, Thermococcus sibiricus MM 739, Thermococcus sibiricus str. MM 739, Thermococcus sibiricus strain MM 739
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.