Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TSIB_1789Alanyl-tRNA synthetase-related protein. (409 aa)    
Predicted Functional Partners:
atpD
A1A0 ATP synthase, subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.861
atpB
A1A0 ATP synthase, subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit.
     
 0.852
atpC
A1A0 ATP synthase, subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
  
 0.840
atpF
A1A0 ATP synthase, subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
    0.838
atpE
A1A0 ATP synthase, subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.835
TSIB_1796
A1A0 ATP synthase, subunit c.
  
    0.832
secD
SecD protein-export membrane protein; Involved in protein export.
  
  
 0.821
TSIB_1797
A1A0 ATP synthase, subunit a; Belongs to the V-ATPase 116 kDa subunit family.
       0.803
TSIB_1798
A1A0 ATP synthase, subunit H.
       0.803
atpA
A1A0 ATP synthase, subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
  
    0.731
Your Current Organism:
Thermococcus sibiricus
NCBI taxonomy Id: 604354
Other names: T. sibiricus MM 739, Thermococcus sibiricus MM 739, Thermococcus sibiricus str. MM 739, Thermococcus sibiricus strain MM 739
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