Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TSIB_1933Hypothetical protein. (72 aa)    
Predicted Functional Partners:
TSIB_1934
Hypothetical protein.
       0.847
TSIB_1935
IS element ISTsi3 orfB, probably transposase.
 
     0.649
TSIB_1936
Hypothetical protein.
       0.596
vapC-2
Predicted nucleic acid-binding protein, contains PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
     0.573
TSIB_1615
DUF55 domain containing protein; Belongs to the UPF0310 family.
  
     0.492
TSIB_0007
Oligosaccharyl transferase, STT3 subunit.
  
     0.478
TSIB_1932
Hypothetical protein.
       0.478
TSIB_0496
Predicted AP endonuclease.
  
     0.468
TSIB_1426
Predicted Fe-S-cluster oxidoreductase.
  
     0.463
TSIB_2034
Archaeal ATPase.
  
     0.443
Your Current Organism:
Thermococcus sibiricus
NCBI taxonomy Id: 604354
Other names: T. sibiricus MM 739, Thermococcus sibiricus MM 739, Thermococcus sibiricus str. MM 739, Thermococcus sibiricus strain MM 739
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