STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSIB_1967Hypothetical protein. (83 aa)    
Predicted Functional Partners:
TSIB_1968
ArsR family transcriptional regulator.
 
     0.839
TSIB_1966
Transcriptional regulatory protein, arsR family.
 
     0.731
TSIB_1965
Succinyl-coa synthetase alpha subunit related protein.
       0.523
TSIB_1161
DUF99 domain containing protein; Belongs to the UPF0215 family.
  
     0.495
rpl39e
50S ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family.
  
     0.480
TSIB_0149
Phosphomannomutase-related protein.
  
     0.423
TSIB_1196
Putative HTH-type transcriptional regulatory protein TK0539.
  
     0.420
TSIB_0786
Probable flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.
  
     0.419
albA
DNA/RNA-binding protein Alba; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family.
  
     0.405
Your Current Organism:
Thermococcus sibiricus
NCBI taxonomy Id: 604354
Other names: T. sibiricus MM 739, Thermococcus sibiricus MM 739, Thermococcus sibiricus str. MM 739, Thermococcus sibiricus strain MM 739
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.