Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
TSIB_2018Capsular polysaccharide biosynthesis protein. (414 aa)    
Predicted Functional Partners:
TSIB_2045
RfbB dTDP-glucose 4,6-dehydratase.
  
  
 0.853
TSIB_2047
RfbC dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.853
TSIB_2044
Glucose-1-phosphate thymidylyltransferase.
  
  
 0.850
TSIB_2017
Sugar-phosphate nucleotydyltransferase.
  
  
 0.726
TSIB_0855
Glycosyl transferase.
 
  
 0.667
TSIB_2021
Glycosyl transferase.
 
  
 0.650
TSIB_2061
Glycosyl transferase, group 1.
 
  
 0.639
TSIB_2015
Nucleotidyltransferase.
       0.637
TSIB_1920
UDP-N-acetylglucosamine 2-epimerase.
  
  
 0.634
TSIB_2024
UDP-n-acetylglucosamine 2-epimerase.
  
  
 0.634
Your Current Organism:
Thermococcus sibiricus
NCBI taxonomy Id: 604354
Other names: T. sibiricus MM 739, Thermococcus sibiricus MM 739, Thermococcus sibiricus str. MM 739, Thermococcus sibiricus strain MM 739
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